2DFU | pdb_00002dfu

Crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase from Thermus Thermophilus HB8


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyFAH 8052518 3001446 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyFAH N-terminal domain-like 8052516 3001866 SCOP2B (2022-06-29)
BSCOP2 FamilyCg1458 N-terminal domain-like 8044764 4004122 SCOP2 (2022-06-29)
BSCOP2 FamilyFAH 8052517 4002580 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyFAH N-terminal domain-like 8052516 3001866 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyFAH 8052518 3001446 SCOP2 (2022-06-29)
CSCOP2B SuperfamilyFAH N-terminal domain-like 8052516 3001866 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyFAH 8052518 3001446 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyFAH N-terminal domain-like 8052516 3001866 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyFAH 8052518 3001446 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AFAA_hydrolasee2dfuA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: FAH (From Topology)T: FAHF: FAA_hydrolaseECOD (1.6)
BFAA_hydrolasee2dfuB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: FAH (From Topology)T: FAHF: FAA_hydrolaseECOD (1.6)
CFAA_hydrolasee2dfuC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: FAH (From Topology)T: FAHF: FAA_hydrolaseECOD (1.6)
DFAA_hydrolasee2dfuD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: FAH (From Topology)T: FAHF: FAA_hydrolaseECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.30.30.370 Mainly Beta Roll SH3 type barrels. FAHCATH (4.3.0)
A3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase domain 2CATH (4.3.0)
B2.30.30.370 Mainly Beta Roll SH3 type barrels. FAHCATH (4.3.0)
B3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase domain 2CATH (4.3.0)
C2.30.30.370 Mainly Beta Roll SH3 type barrels. FAHCATH (4.3.0)
C3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase domain 2CATH (4.3.0)
D2.30.30.370 Mainly Beta Roll SH3 type barrels. FAHCATH (4.3.0)
D3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF01557Fumarylacetoacetate (FAA) hydrolase C-terminal (FAA_hydrolase)Fumarylacetoacetate (FAA) hydrolase C-terminalThis entry consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydroly ...This entry consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydrolyses fumarylacetoacetate into fumarate and acetoacetate which then join the citric acid cycle [1]. Mutations in FAA cause type I tyrosinemia in humans this is an inherited disorder mainly affecting the liver leading to liver cirrhosis, hepatocellular carcinoma, renal tubular damages and neurologic crises amongst other symptoms [1]. The enzymatic defect causes the toxic accumulation of phenylalanine/tyrosine catabolites [3]. The E. coli W enzyme HHDD isomerase/OPET decarboxylase contains two copies of this domain and functions in fourth and fifth steps of the homoprotocatechuate pathway; here it decarboxylates OPET to HHDD and isomerises this to OHED. The final products of this pathway are pyruvic acid and succinic semialdehyde. This family also includes various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. 2-hydroxypentadienoic acid hydratase encoded by mhpD in E. coli Swiss:P77608 is involved in the phenylpropionic acid pathway of E. coli and catalyses the conversion of 2-hydroxy pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a Mn2+ co-factor [5]. OHED hydratase encoded by hpcG in E. coli Swiss:P42270 is involved in the homoprotocatechuic acid (HPC) catabolism [6]. XylI in P. putida Swiss:P49155 is a 4-Oxalocrotonate decarboxylase [7].
Domain
A, B, C, D
PF10370Rv2993c-like, N-terminal (Rv2993c-like_N)Rv2993c-like, N-terminalThis is the N-terminal 50 amino acids of a group of bacterial proteins annotated as fumarylacetoacetate hydrolase-containing enzymes, including Rv2993c from Mycobacterium tuberculosis. In most cases members are associated with FAA_hydrolase Pfam:PF01 ...This is the N-terminal 50 amino acids of a group of bacterial proteins annotated as fumarylacetoacetate hydrolase-containing enzymes, including Rv2993c from Mycobacterium tuberculosis. In most cases members are associated with FAA_hydrolase Pfam:PF01557 further towards the C-terminus.
Domain