Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyAcsC C-terminal domain-like 8089866 3002396 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyDihydropteroate synthetase-like 8089865 3000643 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAcsC Fe-S domain-like 8089863 3002395 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDihydropteroate synthetase-like 8089865 3000643 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyAcsC Fe-S domain-like 8089863 3002395 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyAcsC C-terminal domain-like 8089866 3002396 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyAcsC Fe-S domain-like 8089863 3002395 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyDihydropteroate synthetase-like 8089865 3000643 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyAcsC C-terminal domain-like 8089866 3002396 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyDihydropteroate synthetase-like 8089865 3000643 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyAcsC Fe-S domain-like 8089863 3002395 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyAcsC C-terminal domain-like 8089866 3002396 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDihydropteroate synthetase-like 8089867 3000643 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyDihydropteroate synthetase-like 8089867 3000643 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyDihydropteroate synthetase-like 8089867 3000643 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyDihydropteroate synthetase-like 8089867 3000643 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACdhD_Ne4c1nA3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: CdhD_NECOD (1.6)
ACdhD_Ce4c1nA1 A: a/b three-layered sandwichesX: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)H: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)T: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunitF: CdhD_CECOD (1.6)
AFeSe4c1nA2 A: few secondary structure elementsX: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)H: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)T: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunitF: FeSECOD (1.6)
CCdhD_Ne4c1nC3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: CdhD_NECOD (1.6)
CCdhD_Ce4c1nC1 A: a/b three-layered sandwichesX: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)H: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)T: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunitF: CdhD_CECOD (1.6)
CFeSe4c1nC2 A: few secondary structure elementsX: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)H: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)T: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunitF: FeSECOD (1.6)
ECdhD_Ne4c1nE3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: CdhD_NECOD (1.6)
ECdhD_Ce4c1nE1 A: a/b three-layered sandwichesX: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)H: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)T: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunitF: CdhD_CECOD (1.6)
EFeSe4c1nE2 A: few secondary structure elementsX: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)H: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)T: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunitF: FeSECOD (1.6)
GCdhD_Ne4c1nG3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: CdhD_NECOD (1.6)
GCdhD_Ce4c1nG1 A: a/b three-layered sandwichesX: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)H: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)T: B12 binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunitF: CdhD_CECOD (1.6)
GFeSe4c1nG2 A: few secondary structure elementsX: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)H: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit (From Topology)T: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunitF: FeSECOD (1.6)
BCdhD_Ne4c1nB1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: CdhD_NECOD (1.6)
DCdhD_Ne4c1nD1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: CdhD_NECOD (1.6)
FCdhD_Ne4c1nF1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: CdhD_NECOD (1.6)
HCdhD_Ne4c1nH1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: CdhD_NECOD (1.6)
IEUF08308e4c1nI3 A: a+b two layersX: Ribosomal protein L31e-likeH: Reductive activator for corrinoid/iron-sulfur protein second domain (From Topology)T: Reductive activator for corrinoid/iron-sulfur protein second domainF: EUF08308ECOD (1.6)
IDUF4445_Ce4c1nI1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DUF4445_CECOD (1.6)
IDUF4445_Ne4c1nI2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DUF4445_NECOD (1.6)
JEUF08308e4c1nJ3 A: a+b two layersX: Ribosomal protein L31e-likeH: Reductive activator for corrinoid/iron-sulfur protein second domain (From Topology)T: Reductive activator for corrinoid/iron-sulfur protein second domainF: EUF08308ECOD (1.6)
JDUF4445_Ce4c1nJ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DUF4445_CECOD (1.6)
JDUF4445_Ne4c1nJ2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DUF4445_NECOD (1.6)
L [auth X]EUF08308e4c1nX3 A: a+b two layersX: Ribosomal protein L31e-likeH: Reductive activator for corrinoid/iron-sulfur protein second domain (From Topology)T: Reductive activator for corrinoid/iron-sulfur protein second domainF: EUF08308ECOD (1.6)
L [auth X]DUF4445_Ce4c1nX1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DUF4445_CECOD (1.6)
L [auth X]DUF4445_Ne4c1nX2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DUF4445_NECOD (1.6)
KEUF08308e4c1nK3 A: a+b two layersX: Ribosomal protein L31e-likeH: Reductive activator for corrinoid/iron-sulfur protein second domain (From Topology)T: Reductive activator for corrinoid/iron-sulfur protein second domainF: EUF08308ECOD (1.6)
KDUF4445_Ce4c1nK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DUF4445_CECOD (1.6)
KDUF4445_Ne4c1nK2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: DUF4445_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.15.40 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II Chain A, domain 3CATH (4.3.0)
A3.20.20.20 Alpha Beta Alpha-Beta Barrel TIM Barrel Dihydropteroate synthase-likeCATH (4.3.0)
A3.40.50.11600 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
C1.10.15.40 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II Chain A, domain 3CATH (4.3.0)
C3.20.20.20 Alpha Beta Alpha-Beta Barrel TIM Barrel Dihydropteroate synthase-likeCATH (4.3.0)
C3.40.50.11600 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
E1.10.15.40 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II Chain A, domain 3CATH (4.3.0)
E3.20.20.20 Alpha Beta Alpha-Beta Barrel TIM Barrel Dihydropteroate synthase-likeCATH (4.3.0)
E3.40.50.11600 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
G1.10.15.40 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II Chain A, domain 3CATH (4.3.0)
G3.20.20.20 Alpha Beta Alpha-Beta Barrel TIM Barrel Dihydropteroate synthase-likeCATH (4.3.0)
G3.40.50.11600 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
B3.20.20.20 Alpha Beta Alpha-Beta Barrel TIM Barrel Dihydropteroate synthase-likeCATH (4.3.0)
D3.20.20.20 Alpha Beta Alpha-Beta Barrel TIM Barrel Dihydropteroate synthase-likeCATH (4.3.0)
F3.20.20.20 Alpha Beta Alpha-Beta Barrel TIM Barrel Dihydropteroate synthase-likeCATH (4.3.0)
H3.20.20.20 Alpha Beta Alpha-Beta Barrel TIM Barrel Dihydropteroate synthase-likeCATH (4.3.0)
I3.10.20.880 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (4.3.0)
I3.30.420.480 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
J3.10.20.880 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (4.3.0)
J3.30.420.480 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
L [auth X]3.10.20.880 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (4.3.0)
L [auth X]3.30.420.480 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
K3.10.20.880 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (4.3.0)
K3.30.420.480 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E, G
PF04060Putative Fe-S cluster (FeS)Putative Fe-S clusterThis family includes a domain with four conserved cysteines that probably form an Fe-S redox cluster. Domain
A, C, E, G
PF03599CO dehydrogenase/acetyl-CoA synthase delta subunit (CdhD)CO dehydrogenase/acetyl-CoA synthase delta subunit- Family
B, D, F, H
PF03599CO dehydrogenase/acetyl-CoA synthase delta subunit (CdhD)CO dehydrogenase/acetyl-CoA synthase delta subunit- Family
I,
J,
L [auth X]
PF17651RACo middle region (Raco_middle)RACo middle regionThis family includes reductive activator of CoFeSP (RACo) proteins, Swiss:Q3ACS2. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region Pfam:PF00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 9 ...This family includes reductive activator of CoFeSP (RACo) proteins, Swiss:Q3ACS2. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region Pfam:PF00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 95-125), the middle region (residues 126-206), and the large C-terminal domain Pfam:PF14574 (residues 207-630). This entry pertains to the middle region. This region contains residues in their alpha-helices (H6 and H7) that mediate dimerization with subdomain I of the C-terminal domain.
Domain
I,
J,
L [auth X]
PF17650RACo linker region (RACo_linker)RACo linker regionThis family includes reductive activator of CoFeSP (RACo) proteins, Swiss:Q3ACS2. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region Pfam:PF00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 9 ...This family includes reductive activator of CoFeSP (RACo) proteins, Swiss:Q3ACS2. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region Pfam:PF00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 95-125), the middle region (residues 126-206), and the large C-terminal domain Pfam:PF14574 (residues 207-630). This entry pertains to the linker region. The linker region is only present in RACE (reductive activases for corrinoid enzymes) protein sequences with the N-terminal [2Fe-2S] cluster family Pfam:PF00111 and is absent in the RamA-like RACE proteins, suggesting that the linker domain and the N-terminal domain form one functional unit [1].
Domain
I,
J,
L [auth X]
PF14574C-terminal domain of RACo the ASKHA domain (RACo_C_ter)C-terminal domain of RACo the ASKHA domainThis family includes reductive activator of CoFeSP (RACo) proteins, Swiss:Q3ACS2. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region Pfam:PF00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 9 ...This family includes reductive activator of CoFeSP (RACo) proteins, Swiss:Q3ACS2. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region Pfam:PF00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 95-125), the middle region (residues 126-206), and the large C-terminal domain (residues 207-630). This entry is specific for the C-terminal domain which harbors the ATP-binding site. Structural studies show that the C-terminal domain contains the conserved beta-beta-beta-alpha-beta-alpha-beta-alpha topology characteristic of the ASKHA (acetate and sugar kinases/heat shock protein 70/actin). Despite the low-sequence identity shared between members of the ASKHA super family, they show a common central fold. Members of the ASKHA include proteins that catalyze phosphoryl transfers or hydrolysis of ATP in a variety of biological contexts. Asp, Asn, Glu, and Gln residues are well conserved in the core of the ASKHA proteins, where they interact with the phosphates of ATP and the bound Mg2+ ions.
Domain
PF17651RACo middle region (Raco_middle)RACo middle regionThis family includes reductive activator of CoFeSP (RACo) proteins, Swiss:Q3ACS2. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region Pfam:PF00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 9 ...This family includes reductive activator of CoFeSP (RACo) proteins, Swiss:Q3ACS2. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region Pfam:PF00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 95-125), the middle region (residues 126-206), and the large C-terminal domain Pfam:PF14574 (residues 207-630). This entry pertains to the middle region. This region contains residues in their alpha-helices (H6 and H7) that mediate dimerization with subdomain I of the C-terminal domain.
Domain
PF17650RACo linker region (RACo_linker)RACo linker regionThis family includes reductive activator of CoFeSP (RACo) proteins, Swiss:Q3ACS2. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region Pfam:PF00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 9 ...This family includes reductive activator of CoFeSP (RACo) proteins, Swiss:Q3ACS2. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region Pfam:PF00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 95-125), the middle region (residues 126-206), and the large C-terminal domain Pfam:PF14574 (residues 207-630). This entry pertains to the linker region. The linker region is only present in RACE (reductive activases for corrinoid enzymes) protein sequences with the N-terminal [2Fe-2S] cluster family Pfam:PF00111 and is absent in the RamA-like RACE proteins, suggesting that the linker domain and the N-terminal domain form one functional unit [1].
Domain
PF14574C-terminal domain of RACo the ASKHA domain (RACo_C_ter)C-terminal domain of RACo the ASKHA domainThis family includes reductive activator of CoFeSP (RACo) proteins, Swiss:Q3ACS2. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region Pfam:PF00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 9 ...This family includes reductive activator of CoFeSP (RACo) proteins, Swiss:Q3ACS2. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region Pfam:PF00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 95-125), the middle region (residues 126-206), and the large C-terminal domain (residues 207-630). This entry is specific for the C-terminal domain which harbors the ATP-binding site. Structural studies show that the C-terminal domain contains the conserved beta-beta-beta-alpha-beta-alpha-beta-alpha topology characteristic of the ASKHA (acetate and sugar kinases/heat shock protein 70/actin). Despite the low-sequence identity shared between members of the ASKHA super family, they show a common central fold. Members of the ASKHA include proteins that catalyze phosphoryl transfers or hydrolysis of ATP in a variety of biological contexts. Asp, Asn, Glu, and Gln residues are well conserved in the core of the ASKHA proteins, where they interact with the phosphates of ATP and the bound Mg2+ ions.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, G
CARBON MONOXIDE DEHYDROGENASE CORRINOID/IRON-SULFUR PROTEIN, GAMMA SUBUNIT -
B, D, F, H
CO DEHYDROGENASE/ACETYL-COA SYNTHASE, IRON-SULFUR PROTEIN- - -
I,
J,
L [auth X]
IRON-SULFUR CLUSTER BINDING PROTEIN - -
IRON-SULFUR CLUSTER BINDING PROTEIN - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, C, E, G
IPR016218Acetyl-CoA decarbonylase/synthase complex, gamma subunitFamily
A, C, E, G
IPR016041CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrelDomain
A, C, E, G
IPR0072024Fe-4S domainDomain
A, C, E, G
IPR011005Dihydropteroate synthase-like superfamilyHomologous Superfamily
A, C, E, G
IPR051069Acetyl-CoA decarbonylase/synthase complex subunitFamily
B, D, F, H
IPR016041CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrelDomain
B, D, F, H
IPR011005Dihydropteroate synthase-like superfamilyHomologous Superfamily
B, D, F, H
IPR051069Acetyl-CoA decarbonylase/synthase complex subunitFamily
I,
J,
L [auth X]
IPR041414RACo-like, middle regionDomain
I,
J,
L [auth X]
IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
I,
J,
L [auth X]
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
I,
J,
L [auth X]
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
I,
J,
L [auth X]
IPR012675Beta-grasp domain superfamilyHomologous Superfamily
I,
J,
L [auth X]
IPR042259RACo-like, middle domain superfamilyHomologous Superfamily
I,
J,
L [auth X]
IPR027980RACo, C-terminalDomain
I,
J,
L [auth X]
IPR040506RACo linker regionDomain
I,
J,
L [auth X]
IPR052911Corrinoid activation enzymeFamily
IPR041414RACo-like, middle regionDomain
IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR012675Beta-grasp domain superfamilyHomologous Superfamily
IPR042259RACo-like, middle domain superfamilyHomologous Superfamily
IPR027980RACo, C-terminalDomain
IPR040506RACo linker regionDomain
IPR052911Corrinoid activation enzymeFamily