Ligand validation:3GP9

GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 3GP9 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
3GP9_GDP_B_138	25%	42%	0.202	0.84	0.92	1.3	1	4	2	0	100%	0.64
3GP9_GDP_C_138	20%	42%	0.219	0.82	0.95	1.29	1	4	0	0	100%	0.64
3GP9_GDP_F_138	14%	41%	0.282	0.839	0.95	1.35	1	4	0	0	100%	0.64
3GP9_GDP_A_138	9%	43%	0.339	0.83	0.91	1.27	1	3	2	0	100%	0.64
3GP9_GDP_E_138	7%	42%	0.331	0.787	0.92	1.31	1	3	0	0	100%	0.64
3GP9_GDP_D_138	4%	39%	0.341	0.73	0.95	1.44	1	4	4	0	100%	0.64
3FBE_GDP_A_138	11%	42%	0.308	0.829	0.89	1.33	-	5	10	0	100%	1
1TVK_GDP_B_1500	100%	23%	0.012	0.999	2.28	0.95	3	2	8	0	100%	1
9BL0_GDP_A_201	100%	46%	0.016	0.998	0.96	1.11	1	2	1	0	100%	1
9C3K_GDP_A_201	100%	39%	0.016	0.998	1.17	1.21	1	2	1	0	100%	1
9C3L_GDP_A_201	100%	49%	0.021	0.997	0.91	1.04	1	1	0	0	100%	1
9C3N_GDP_A_202	100%	38%	0.017	0.998	1.36	1.06	3	1	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.