Download MendeleyThe crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex
Fukunaga, R., Yokoyama, S.To be published.
1WZ2 | pdb_00001wz2
The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex
- PDB DOI: https://doi.org/10.2210/pdb1WZ2/pdb
- NAKB: 1WZ2
- Classification: Ligase/RNA
- Organism(s): Pyrococcus horikoshii OT3
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2005-02-21 Released: 2005-09-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.21 Å
- R-Value Free: 0.305 (Depositor), 0.300 (DCC)
- R-Value Work: 0.241 (Depositor), 0.240 (DCC)
- R-Value Observed: 0.241 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Leucyl-tRNA synthetase | C [auth A], D [auth B] | 967 | Pyrococcus horikoshii OT3 | Mutation(s): 0 Gene Names: leuS EC: 6.1.1.4 |  |
UniProt | |||||
Find proteins for O58698 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O58698 Go to UniProtKB: O58698 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O58698 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| tRNA | A [auth C], B [auth D] | 88 | N/A |  | |
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.21 Å
- R-Value Free: 0.305 (Depositor), 0.300 (DCC)
- R-Value Work: 0.241 (Depositor), 0.240 (DCC)
- R-Value Observed: 0.241 (Depositor)
Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 120.546 | α = 90 |
| b = 231.127 | β = 90 |
| c = 118.181 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2005-09-06 Deposition Author(s): Fukunaga, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2005-09-06
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2024-03-13
Changes: Data collection, Database references
