Download MendeleyCrystal structure of ABC-type sugar transport system, periplasmic component from Hahella chejuensis
Bagaria, A., Kumaran, D., Burley, S.K., Swaminathan, S.To be published.
3KSM | pdb_00003ksm
Crystal structure of ABC-type sugar transport system, periplasmic component from Hahella chejuensis
- PDB DOI: https://doi.org/10.2210/pdb3KSM/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Hahella chejuensis KCTC 2396
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-11-23 Released: 2009-12-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.203 (Depositor), 0.200 (DCC)
- R-Value Work: 0.162 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.164 (Depositor)
This is version 2.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ABC-type sugar transport system, periplasmic component | 276 | Hahella chejuensis KCTC 2396 | Mutation(s): 0 Gene Names: HCH_06819 |  | |
UniProt | |||||
Find proteins for Q2S7D2 (Hahella chejuensis (strain KCTC 2396)) Explore Q2S7D2 Go to UniProtKB: Q2S7D2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2S7D2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BDR Query on BDR | C [auth A], D [auth B] | beta-D-ribofuranose C5 H10 O5 HMFHBZSHGGEWLO-TXICZTDVSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.203 (Depositor), 0.200 (DCC)
- R-Value Work: 0.162 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.164 (Depositor)
Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 37.439 | α = 103.49 |
| b = 47.712 | β = 90.49 |
| c = 79.723 | γ = 91.06 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHARP | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-12-15 Deposition Author(s): Bagaria, A., Kumaran, D., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-12-15
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2021-02-10
Changes: Database references, Structure summary - Version 2.2: 2024-11-20
Changes: Data collection, Database references, Structure summary
