Download MendeleyCrystal structure of Porcine Pancreatic Phospholipase A2 in complex with 1-Naphthaleneacetic acid
Dileep, K.V., Remya, C., Tintu, I., Mandal, P.K., Karthe, P., Haridas, M., Sadasivan, C.To be published.
4O1Y | pdb_00004o1y
Crystal structure of Porcine Pancreatic Phospholipase A2 in complex with 1-Naphthaleneacetic acid
- PDB DOI: https://doi.org/10.2210/pdb4O1Y/pdb
- Classification: HYDROLASE
- Organism(s): Sus scrofa
- Mutation(s): No
- Deposited: 2013-12-16 Released: 2014-01-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.245 (Depositor), 0.260 (DCC)
- R-Value Work: 0.185 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.188 (Depositor)
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phospholipase A2, major isoenzyme | 124 | Sus scrofa | Mutation(s): 0 EC: 3.1.1.4 |  | |
UniProt | |||||
Find proteins for P00592 (Sus scrofa) Explore P00592 Go to UniProtKB: P00592 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00592 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NLA Query on NLA | B [auth A] | NAPHTHALEN-1-YL-ACETIC ACID C12 H10 O2 PRPINYUDVPFIRX-UHFFFAOYSA-N |  | ||
| CA Query on CA | C [auth A], D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.245 (Depositor), 0.260 (DCC)
- R-Value Work: 0.185 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.188 (Depositor)
Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.36 | α = 90 |
| b = 68.36 | β = 90 |
| c = 70.12 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MAR345dtb | data collection |
| AMoRE | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2014-01-29 Deposition Author(s): Dileep, K.V., Remya, C., Tintu, I., Mandal, P.K., Karthe, P., Haridas, M., Sadasivan, C.
Revision History (Full details and data files)
- Version 1.0: 2014-01-29
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.2: 2024-10-30
Changes: Structure summary
