Download MendeleyThe Crystal structure of Dbr2
Li, L.To be published.
5DY2 | pdb_00005dy2
Crystal structure of Dbr2 with mutation M27L
- PDB DOI: https://doi.org/10.2210/pdb5DY2/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Artemisia annua
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2015-09-24 Released: 2016-10-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.57 Å
- R-Value Free: 0.190 (Depositor), 0.190 (DCC)
- R-Value Work: 0.161 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.162 (Depositor)
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Artemisinic aldehyde Delta(11(13)) reductase | 387 | Artemisia annua | Mutation(s): 1 Gene Names: DBR2 EC: 1.3.1.92 |  | |
UniProt | |||||
Find proteins for C5H429 (Artemisia annua) Explore C5H429 Go to UniProtKB: C5H429 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C5H429 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMN Query on FMN | B [auth A] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N |  | ||
| DIN Query on DIN | C [auth A] | 1,6-DIHYDROXY NAPHTHALENE C10 H8 O2 FZZQNEVOYIYFPF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.57 Å
- R-Value Free: 0.190 (Depositor), 0.190 (DCC)
- R-Value Work: 0.161 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.162 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.62 | α = 90 |
| b = 81.02 | β = 90 |
| c = 86.53 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XSCALE | data reduction |
Entry History
Deposition Data
- Released Date: 2016-10-05 Deposition Author(s): Li, L., Chen, T.T., Xu, Y.C.
Revision History (Full details and data files)
- Version 1.0: 2016-10-05
Type: Initial release - Version 1.1: 2017-10-11
Changes: Data collection, Derived calculations - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description
