Download MendeleyRNA duplex with 2-MeImpG analogue bound-3 binding sites
Zhang, W., Tam, C.P., Szostak, J.W.To be published.
5V0K | pdb_00005v0k
RNA duplex with 2-MeImpG analogue bound-3 binding sites
- PDB DOI: https://doi.org/10.2210/pdb5V0K/pdb
- NAKB: 5V0K
- Classification: RNA
- Organism(s): synthetic construct
- Mutation(s): No
- Deposited: 2017-02-28 Released: 2017-03-08
- Funding Organization(s): National Science Foundation (NSF, United States)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.226 (Depositor), 0.220 (DCC)
- R-Value Work: 0.174 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.177 (Depositor)
Starting Model: experimental
View more details
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-3') | 13 | synthetic construct |  | ||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 8OS Query on 8OS | B [auth A], C [auth A] | 5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl)phosphoryl]guanosine C14 H18 N7 O7 P MUFMHNGPMISZRD-HTVVRFAVSA-N |  | ||
| MG Query on MG | D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.226 (Depositor), 0.220 (DCC)
- R-Value Work: 0.174 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.177 (Depositor)
Space Group: P 3 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 42.229 | α = 90 |
| b = 42.229 | β = 90 |
| c = 40.098 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-03-08 Deposition Author(s): Zhang, W., Tam, C.P., Szostak, J.W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Science Foundation (NSF, United States) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2017-03-08
Type: Initial release - Version 1.1: 2017-09-20
Changes: Author supporting evidence - Version 1.2: 2019-11-27
Changes: Author supporting evidence - Version 1.3: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description
