Download MendeleyCrystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.1 - apo form
Silva, A., Nunes-Costa, D., Empadinhas, N., Barbosa Pereira, P.J., Macedo-Ribeiro, S.To be published.
7P5L | pdb_00007p5l
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.1 - apo form
- PDB DOI: https://doi.org/10.2210/pdb7P5L/pdb
- Classification: TRANSFERASE
- Organism(s): Mycolicibacterium hassiacum DSM 44199
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2021-07-14 Released: 2023-01-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.22 Å
- R-Value Free: 0.164 (Depositor), 0.160 (DCC)
- R-Value Work: 0.143 (Depositor), 0.140 (DCC)
- R-Value Observed: 0.144 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glucosyl-3-phosphoglycerate synthase | 327 | Mycolicibacterium hassiacum DSM 44199 | Mutation(s): 0 Gene Names: gpgS, C731_3243, MHAS_02845 EC: 2.4.1.266 |  | |
UniProt | |||||
Find proteins for K5B7Z4 (Mycolicibacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849)) Explore K5B7Z4 Go to UniProtKB: K5B7Z4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | K5B7Z4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MLT Query on MLT | D [auth B] | D-MALATE C4 H6 O5 BJEPYKJPYRNKOW-UWTATZPHSA-N |  | ||
| LMR Query on LMR | C [auth A] | (2S)-2-hydroxybutanedioic acid C4 H6 O5 BJEPYKJPYRNKOW-REOHCLBHSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.22 Å
- R-Value Free: 0.164 (Depositor), 0.160 (DCC)
- R-Value Work: 0.143 (Depositor), 0.140 (DCC)
- R-Value Observed: 0.144 (Depositor)
Diffraction Data: https://doi.org/10.15785/SBGRID/995
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.098 | α = 90 |
| b = 90.605 | β = 90 |
| c = 95.264 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2023-01-18 Deposition Author(s): Silva, A., Nunes-Costa, D., Barbosa Pereira, P.J., Macedo-Ribeiro, S.
Revision History (Full details and data files)
- Version 1.0: 2023-01-18
Type: Initial release - Version 1.1: 2023-03-01
Changes: Structure summary - Version 1.2: 2024-02-07
Changes: Data collection, Refinement description
