8VOU | pdb_00008vou

Human glutathione transferase M1-1 in complex with the adduct between glutathione and nitrooleic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 
    0.227 (Depositor), 0.221 (DCC) 
  • R-Value Work: 
    0.195 (Depositor), 0.194 (DCC) 
  • R-Value Observed: 
    0.196 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Human glutathione transferases catalyze the reaction between glutathione and nitrooleic acid.

Steglich, M.Larrieux, N.Zeida, A.Dalla Rizza, J.Salvatore, S.R.Bonilla, M.Moller, M.N.Buschiazzo, A.Alvarez, B.Schopfer, F.J.Turell, L.

(2025) J Biological Chem 301: 108362-108362

  • DOI: https://doi.org/10.1016/j.jbc.2025.108362
  • Primary Citation of Related Structures:  
    8VOU

  • PubMed Abstract: 

    Nitroalkene fatty acids (NO 2 -FAs) are formed endogenously. They regulate cell signaling pathways and are being developed clinically to treat inflammatory diseases. NO 2 -FAs are electrophilic and form thioether adducts with glutathione (GSH), which are exported from cells. Glutathione transferases (GSTs), a superfamily of enzymes, contribute to the cellular detoxification of hydrophobic electrophiles by catalyzing their conjugation to GSH. Herein, we evaluated the capacity of five human GSTs (M1-1, M2-2, M4-4, A4-4, and P1-1) to catalyze the reaction between nitrooleic acid (NO 2 -OA) and GSH. The reaction was monitored by HPLC-ESI-MS/MS and catalytic activity was detected with hGSTs M1-1 and A4-4. Using stopped-flow spectrophotometry, a 1400 and 7500-fold increase in the apparent second-order rate constant was observed for hGST M1-1 and hGST A4-4, respectively, compared to the uncatalyzed reaction (pH 7.4, 25 °C), in part due to a higher availability of the thiolate. The crystal structure of hGST M1-1 in complex with the adduct was solved at 2.55 Å resolution, revealing that the ligand was bound within the reaction center, and establishing a foundation to build a model of hGST A4-4 in complex with the adduct. A larger number of interactions between the enzyme and the fatty acid were observed for hGST A4-4 compared to hGST M1-1, probably contributing to the increased catalysis. Altogether, these results show, for the first time, that hGSTs can catalyze the reaction between GSH and NO 2 -FAs, likely affecting the signaling actions of these metabolites and expanding the repertoire of GST reactions.


  • Organizational Affiliation

    Laboratorio de Enzimología, Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, Uruguay; Centro de Investigaciones Biomédicas (CEINBIO), Universidad de la República, Uruguay; Graduate Program in Chemistry, Facultad de Química, Universidad de la República, Uruguay.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferase Mu 1
A, B, C, D
218Homo sapiensMutation(s): 0 
Gene Names: GSTM1GST1
EC: 2.5.1.18
UniProt & NIH Common Fund Data Resources
Find proteins for P09488 (Homo sapiens)
Explore P09488 
Go to UniProtKB:  P09488
PHAROS:  P09488
GTEx:  ENSG00000134184 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09488
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free:  0.227 (Depositor), 0.221 (DCC) 
  • R-Value Work:  0.195 (Depositor), 0.194 (DCC) 
  • R-Value Observed: 0.196 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 57.383α = 90
b = 84.025β = 90
c = 213.321γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
xia2.multiplexdata reduction
xia2.multiplexdata scaling
FFTphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Comision Sectorial de Investigacion Cientifica, Universidad de la RepublicaUruguay--

Revision History  (Full details and data files)

  • Version 1.0: 2025-03-12
    Type: Initial release
  • Version 1.1: 2025-04-09
    Changes: Database references