8Z95 | pdb_00008z95

Humanized anti-PEG h6.3 Fab in complex with PEG


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 
    0.261 (Depositor), 0.265 (DCC) 
  • R-Value Work: 
    0.209 (Depositor), 0.217 (DCC) 
  • R-Value Observed: 
    0.212 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


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Literature

pH-Responsive Polyethylene Glycol Engagers for Enhanced Brain Delivery of PEGylated Nanomedicine to Treat Glioblastoma.

Meng, J.L.Dong, Z.X.Chen, Y.R.Lin, M.H.Liu, Y.C.Roffler, S.R.Lin, W.W.Chang, C.Y.Tzou, S.C.Cheng, T.L.Huang, H.C.Li, Z.Q.Lin, Y.C.Su, Y.C.

(2025) ACS Nano 19: 307-321

  • DOI: https://doi.org/10.1021/acsnano.4c05906
  • Primary Citation of Related Structures:  
    8Z95

  • PubMed Abstract: 

    The blood-brain barrier (BBB) remains a major obstacle for effective delivery of therapeutics to treat central nervous system (CNS) disorders. Although transferrin receptor (TfR)-mediated transcytosis is widely employed for brain drug delivery, the inefficient release of therapeutic payload hinders their efficacy from crossing the BBB. Here, we developed a pH-responsive anti-polyethylene glycol (PEG) × anti-TfR bispecific antibody (pH-PEG engager TfR ) that can complex with PEGylated nanomedicine at physiological pH to trigger TfR-mediated transcytosis in the brain microvascular endothelial cells, while rapidly dissociating from PEGylated nanomedicine at acidic endosomes for efficient release of PEGylated nanomedicine to cross the BBB. The pH-PEG engager TfR significantly increased the accumulation of PEGylated nanomedicine in the mouse brain compared to wild-type PEG engager TfR (WT-PEG engager TfR ). pH-PEG engager TfR -decorated PEGylated liposomal doxorubicin exhibited an enhanced antitumor effect and extended survival in a human glioblastoma (GBM) orthotopic xenograft mice model. Conditional release of PEGylated nanomedicine during BBB-related receptor-mediated transcytosis by pH-PEG engager TfR is promising for enhanced brain drug delivery to treat CNS disorders.


  • Organizational Affiliation

    Department of Biological Science and Technology, Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B), National Yang Ming Chiao Tung University, Hsinchu 300, Taiwan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Heavy chain of Anti-PEG antibody h6-3 Fab fragmentA,
C [auth H]
219Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Light chain of Anti-PEG antibody h6-3 Fab fragmentB,
D [auth L]
219Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PEU (Subject of Investigation/LOI)
Query on PEU

Download Ideal Coordinates CCD File 
E [auth A]2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL
C55 H112 O28
ISGUIIHZEJGUGQ-UHFFFAOYSA-N
IPA
Query on IPA

Download Ideal Coordinates CCD File 
F [auth B]ISOPROPYL ALCOHOL
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free:  0.261 (Depositor), 0.265 (DCC) 
  • R-Value Work:  0.209 (Depositor), 0.217 (DCC) 
  • R-Value Observed: 0.212 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 245.365α = 90
b = 43.574β = 111.7
c = 110.148γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
SCALAdata scaling
HKL-2000data collection
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, Taiwan)Taiwan--

Revision History  (Full details and data files)

  • Version 1.0: 2025-02-12
    Type: Initial release