Download MendeleyCrystal structure of RaTG13 RBD bound to Rhinolophus affinis ACE2
Lan, J., Wang, C.H.To be published.
8Z9I | pdb_00008z9i
Crystal structure of RaTG13 RBD bound to Rhinolophus affinis ACE2
- PDB DOI: https://doi.org/10.2210/pdb8Z9I/pdb
- Classification: VIRAL PROTEIN/HYDROLASE
- Organism(s): Bat coronavirus RaTG13, Rhinolophus affinis
- Expression System: Trichoplusia ni
- Mutation(s): No
- Deposited: 2024-04-23 Released: 2025-04-30
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.01 Å
- R-Value Free: 0.238 (Depositor), 0.243 (DCC)
- R-Value Work: 0.194 (Depositor), 0.198 (DCC)
- R-Value Observed: 0.196 (Depositor)
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RaTG13 Spike glycoprotein | A [auth O], C [auth E] | 196 | Bat coronavirus RaTG13 | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Glycosylation | |||||
| Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Angiotensin-converting enzyme | B [auth A], D [auth F] | 597 | Rhinolophus affinis | Mutation(s): 0 EC: 3.4 |  |
UniProt | |||||
Find proteins for A0A7D7J6S6 (Rhinolophus affinis) Explore A0A7D7J6S6 Go to UniProtKB: A0A7D7J6S6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A7D7J6S6 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG (Subject of Investigation/LOI) Query on NAG | E [auth O], F [auth E] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.01 Å
- R-Value Free: 0.238 (Depositor), 0.243 (DCC)
- R-Value Work: 0.194 (Depositor), 0.198 (DCC)
- R-Value Observed: 0.196 (Depositor)
Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 100.925 | α = 90 |
| b = 273.391 | β = 90 |
| c = 165.103 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-04-30 Deposition Author(s): Lan, J., Wang, C.H.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-04-30
Type: Initial release
