Download MendeleyWrtF from Rhizobium tropici CIAT 899 is a GT-A fold fucosyltransferase which binds its donor non-productively
Forrester, T.J.B., Kimber, M.S., Lowary, T.L., Lin, S.To be published.
9OMJ | pdb_00009omj
WrtF fucosyltransferase - GDP-beta-L-fucose
- PDB DOI: https://doi.org/10.2210/pdb9OMJ/pdb
- Classification: TRANSFERASE
- Organism(s): Rhizobium tropici CIAT 899
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2025-05-14 Released: 2025-10-29
- Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.210 (Depositor), 0.210 (DCC)
- R-Value Work: 0.174 (Depositor), 0.174 (DCC)
- R-Value Observed: 0.176 (Depositor)
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glycosyltransferase | 279 | Rhizobium tropici CIAT 899 | Mutation(s): 0 Gene Names: GXW80_17485 |  | |
UniProt | |||||
Find proteins for A0A6P1C6J0 (Rhizobium tropici) Explore A0A6P1C6J0 Go to UniProtKB: A0A6P1C6J0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A6P1C6J0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GFB (Subject of Investigation/LOI) Query on GFB | C [auth A], E [auth B] | GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE C16 H25 N5 O15 P2 LQEBEXMHBLQMDB-JGQUBWHWSA-N |  | ||
| GOL Query on GOL | D [auth A], F [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.210 (Depositor), 0.210 (DCC)
- R-Value Work: 0.174 (Depositor), 0.174 (DCC)
- R-Value Observed: 0.176 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.91 | α = 90 |
| b = 65.64 | β = 90 |
| c = 124.12 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-10-29 Deposition Author(s): Forrester, T.J.B., Kimber, M.S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Natural Sciences and Engineering Research Council (NSERC, Canada) | Canada | RGPIN-2020-07113 |
Revision History (Full details and data files)
- Version 1.0: 2025-10-29
Type: Initial release
