2WOD | pdb_00002wod

Crystal Structure of the dinitrogenase reductase-activating glycohydrolase (DRAG) from Rhodospirillum rubrum in complex with ADP- ribsoyllysine

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2wodb_	All alpha proteins	ADP-ribosylglycohydrolase	ADP-ribosylglycohydrolase	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
A	d2woda_	All alpha proteins	ADP-ribosylglycohydrolase	ADP-ribosylglycohydrolase	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	ADP_ribosyl_GH	e2wodB1	A: alpha bundles	X: ADP-ribosylglycohydrolase (From Topology)	H: ADP-ribosylglycohydrolase (From Topology)	T: ADP-ribosylglycohydrolase	F: ADP_ribosyl_GH	ECOD (1.6)
A	ADP_ribosyl_GH	e2wodA1	A: alpha bundles	X: ADP-ribosylglycohydrolase (From Topology)	H: ADP-ribosylglycohydrolase (From Topology)	T: ADP-ribosylglycohydrolase	F: ADP_ribosyl_GH	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.4080.10	Mainly Alpha	Orthogonal Bundle	ADP-ribosylglycohydrolase fold	ADP-ribosylation/Crystallin J1	CATH (4.3.0)
A	1.10.4080.10	Mainly Alpha	Orthogonal Bundle	ADP-ribosylglycohydrolase fold	ADP-ribosylation/Crystallin J1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03747	ADP-ribosylglycohydrolase (ADP_ribosyl_GH)	ADP-ribosylglycohydrolase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	ADP-RIBOSYL-[DINITROGEN REDUCTASE] GLYCOHYDROLASE	cation binding ion binding binding metal ion binding small molecule binding hydrolase activity, acting on glycosyl bonds hydrolase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity ADP-ribosyl-[dinitrogen reductase] hydrolase activity	ammonium ion metabolic process nitrogen cycle metabolic process metabolic process cellular process nitrogen fixation protein de-ADP-ribosylation macromolecule modification primary metabolic process protein metabolic process macromolecule metabolic process protein modification process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR050792	ADP-ribosylglycohydrolase	Family
A, B	IPR036705	ADP-ribosylation/Crystallin J1 superfamily	Homologous Superfamily
A, B	IPR005502	ADP-ribosylation/Crystallin J1	Family
A, B	IPR013479	ADP-ribosyl-dinitrogen reductase hydrolase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.