5JOY | pdb_00005joy

Bacteroides ovatus Xyloglucan PUL GH43A in complex with AraLOG

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5joyb2	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	automated matches	automated matches	(Bacteroides ovatus ) [TaxId: 28116 ],	SCOPe (2.08)
B	d5joyb1	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	automated matches	automated matches	(Bacteroides ovatus ) [TaxId: 28116 ],	SCOPe (2.08)
A	d5joya2	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	automated matches	automated matches	(Bacteroides ovatus ) [TaxId: 28116 ],	SCOPe (2.08)
A	d5joya1	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	automated matches	automated matches	(Bacteroides ovatus ) [TaxId: 28116 ],	SCOPe (2.08)
A	d5joya3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacteroides ovatus ) [TaxId: 28116 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DUF1349_1	e5joyB2	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: DUF1349_1	ECOD (1.6)
B	Glyco_hydro_43	e5joyB1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 5-bladed	F: Glyco_hydro_43	ECOD (1.6)
A	DUF1349_1	e5joyA1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: DUF1349_1	ECOD (1.6)
A	Glyco_hydro_43	e5joyA2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 5-bladed	F: Glyco_hydro_43	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
B	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
A	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF04616	Glycosyl hydrolases family 43 (Glyco_hydro_43)	Glycosyl hydrolases family 43	-	Repeat
A, B	PF17851	Beta xylosidase C-terminal Concanavalin A-like domain (GH43_C2)	Beta xylosidase C-terminal Concanavalin A-like domain	This domain is found to the C-terminus of the Pfam:PF04616 domain. This domain adopts a concanavalin A-like fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Non-reducing end alpha-L-arabinofuranosidase BoGH43A	alpha-L-arabinofuranosidase activity hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	biological process involved in interspecies interaction between organisms symbiotic process benefiting host biological process involved in symbiotic interaction carbohydrate metabolic process catabolic process glucan catabolic process carbohydrate catabolic process hemicellulose catabolic process primary metabolic process macromolecule catabolic process xyloglucan catabolic process polysaccharide metabolic process glucan metabolic process polysaccharide catabolic process biological process involved in interspecies interaction between organisms symbiotic process benefiting host biological process involved in symbiotic interaction carbohydrate metabolic process catabolic process glucan catabolic process carbohydrate catabolic process hemicellulose catabolic process primary metabolic process macromolecule catabolic process xyloglucan catabolic process polysaccharide metabolic process glucan metabolic process polysaccharide catabolic process xyloglucan metabolic process metabolic process cellular process macromolecule metabolic process	cellular anatomical structure periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B	IPR023296	Glycosyl hydrolase, five-bladed beta-propeller domain superfamily	Homologous Superfamily
A, B	IPR006710	Glycoside hydrolase, family 43	Family
A, B	IPR041542	Beta-xylosidase, C-terminal Concanavalin A-like domain	Domain
A, B	IPR051795	Glycosyl Hydrolase Family 43	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.