6TR3 | pdb_00006tr3

Ruminococcus gnavus GH29 fucosidase E1_10125 in complex with fucose


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF5_F8_type_C_2e6tr3A2 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Galactose-binding domain-likeF: F5_F8_type_C_2ECOD (1.6)
AAlpha_L_fucose6tr3A1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Alpha_L_fucosECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (utative)
A2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-likeCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00754F5/8 type C domain (F5_F8_type_C)F5/8 type C domainThis domain is also known as the discoidin (DS) domain family [1]. Domain
PF01120Alpha-L-fucosidase (Alpha_L_fucos)Alpha-L-fucosidaseDomain