8RMY | pdb_00008rmy

Transglutaminase 3 in complex with inhibitor Z-don and DH patient-derived Fab DH63-A02

External Resource: Annotation

Domain Annotation: SCOP2 Classification
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth A]	SCOP2B Superfamily	Cysteine proteinases	8041161	3001808	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	E set domains	8055035	3000070	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cysteine proteinases	8041161	3001808	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	E set domains	8055035	3000070	SCOP2B (2022-06-29)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
A [auth F], B [auth C]	Light Chain	IGKV4	Kappa	protein-glutamine gamma-glutamyltransferase e	SAbDab (2025-05-02)
E, F [auth B]	Heavy Chain	IGHV2	-	protein-glutamine gamma-glutamyltransferase e	SAbDab (2025-05-02)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], D	PF00868	Transglutaminase family (Transglut_N)	Transglutaminase family		Domain
C [auth A], D	PF01841	Transglutaminase-like superfamily (Transglut_core)	Transglutaminase-like superfamily	This domain is found in animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that ...	This domain is found in animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' [1]. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase [2], it is proposed that many, if not all, microbial homologues of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease. [3]	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth F], B [auth C]	Antibody Fab fragment light chain IGKV4-1	-	-	-
C [auth A], D	Protein-glutamine gamma-glutamyltransferase E	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding aminoacyltransferase activity protein-glutamine gamma-glutamyltransferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity structural molecule activity	developmental process epithelium development epidermal cell differentiation cellular developmental process epidermis development animal organ development tissue development epithelial cell differentiation skin development cell differentiation keratinocyte differentiation anatomical structure development cellular process macromolecule modification developmental process epithelium development epidermal cell differentiation cellular developmental process epidermis development animal organ development tissue development epithelial cell differentiation skin development cell differentiation keratinocyte differentiation anatomical structure development cellular process macromolecule modification metabolic process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process multicellular organismal process molting cycle process hair cycle epidermis morphogenesis morphogenesis of an epithelium tissue morphogenesis anatomical structure morphogenesis skin epidermis development hair follicle development molting cycle hair cycle process hair follicle morphogenesis keratinization peptide cross-linking	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm protein-containing complex cell periphery extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm protein-containing complex cell periphery extrinsic component of plasma membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane membrane plasma membrane extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane side of membrane
E, F [auth B]	Antibody Fab fragment heavy chain IGHV2-5	-	-	-
G [auth J], H [auth K]	P6S-ONL-VAL-PRO-MLL	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], D	IPR036985	Transglutaminase-like superfamily	Homologous Superfamily
C [auth A], D	IPR036238	Transglutaminase, C-terminal domain superfamily	Homologous Superfamily
C [auth A], D	IPR002931	Transglutaminase-like	Domain
C [auth A], D	IPR014756	Immunoglobulin E-set	Homologous Superfamily
C [auth A], D	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
C [auth A], D	IPR001102	Transglutaminase, N-terminal	Domain
C [auth A], D	IPR008958	Transglutaminase, C-terminal	Domain
C [auth A], D	IPR050779	Protein-glutamine gamma-glutamyltransferases	Family
C [auth A], D	IPR023608	Protein-glutamine gamma-glutamyltransferase, animal	Family
C [auth A], D	IPR013808	Transglutaminase, active site	Active Site
C [auth A], D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth A], D	Pharos: Q08188	skin basal cell carcinoma uncombable hair syndrome esophageal adenocarcinoma uncombable hair syndrome 2 hepatocellular carcinoma psoriasis uncombable hair syndrome 1

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
G [auth J], H [auth K]	MLL	Parent Component: LEU RESID: AA0299 PSI-MOD : L-leucine methyl ester MOD:00304
G [auth J], H [auth K]	ONL	RESID: AA0299
G [auth J], H [auth K]	P6S	RESID: AA0299

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.