8XK9 | pdb_00008xk9

ternary complex of DNA polymerase SFM4-3 recognizing C2 methyoxy nucleotide

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], F [auth D]	PF00476	DNA polymerase family A (DNA_pol_A)	DNA polymerase family A		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], D [auth E]	DNA (5'-D(GPAPCPCPAPCPGPGPCPGPCP(DOC))-3')	-	-	-
B [auth C], E [auth F]	DNA (5'-D(APAPCPGPGPCPGPCPCPGPTPGPGPTPC)-R(P(OMG))-3')	-	-	-
C [auth A], F [auth D]	DNA polymerase I, thermostable	catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding nucleic acid binding nucleoside binding heterocyclic compound binding carbohydrate derivative binding catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding nucleic acid binding nucleoside binding heterocyclic compound binding carbohydrate derivative binding small molecule binding nuclease activity hydrolase activity, acting on ester bonds 5'-3' exonuclease activity hydrolase activity exonuclease activity	nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus double-strand break repair response to stimulus cellular response to stress DNA damage response nucleobase-containing compound metabolic process DNA-templated DNA replication DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus double-strand break repair response to stimulus cellular response to stress DNA damage response response to stress DNA repair	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], F [auth D]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
C [auth A], F [auth D]	IPR002421	5'-3' exonuclease	Domain
C [auth A], F [auth D]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
C [auth A], F [auth D]	IPR020045	DNA polymerase I-like, H3TH domain	Domain
C [auth A], F [auth D]	IPR015361	Taq polymerase, thermostable, exonuclease region	Domain
C [auth A], F [auth D]	IPR001098	DNA-directed DNA polymerase, family A, palm domain	Domain
C [auth A], F [auth D]	IPR029060	PIN-like domain superfamily	Homologous Superfamily
C [auth A], F [auth D]	IPR036279	5'-3' exonuclease, C-terminal domain superfamily	Homologous Superfamily
C [auth A], F [auth D]	IPR008918	Helix-hairpin-helix motif, class 2	Conserved Site
C [auth A], F [auth D]	IPR002298	DNA polymerase A	Family
C [auth A], F [auth D]	IPR020046	5'-3' exonuclease, alpha-helical arch, N-terminal	Domain
C [auth A], F [auth D]	IPR019760	DNA-directed DNA polymerase, family A, conserved site	Conserved Site
C [auth A], F [auth D]	IPR018320	DNA polymerase 1	Family
C [auth A], F [auth D]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.