Ligand validation:5HKV

SPD: SPERMIDINE

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5HKV_SPD_X_3484	42%	92%	0.201	0.921	0.16	0.38	-	-	5	0	100%	1
5HKV_SPD_X_3485	31%	94%	0.24	0.91	0.19	0.25	-	-	1	0	100%	1
5HKV_SPD_X_3483	21%	86%	0.259	0.872	0.25	0.47	-	-	1	0	100%	1
5HKV_SPD_X_3487	12%	96%	0.31	0.838	0.11	0.24	-	-	0	0	100%	1
5HKV_SPD_X_3489	4%	96%	0.439	0.808	0.14	0.23	-	-	10	0	100%	1
5HKV_SPD_X_3486	2%	89%	0.612	0.9	0.29	0.35	-	-	1	0	100%	1
5HKV_SPD_Y_213	1%	93%	0.464	0.699	0.25	0.24	-	-	0	0	100%	1
5HKV_SPD_X_3488	1%	89%	0.595	0.834	0.26	0.39	-	-	1	0	100%	1
5HKV_SPD_X_3482	1%	95%	0.589	0.826	0.19	0.2	-	-	2	0	100%	1
3C6K_SPD_A_501	100%	56%	0.031	0.993	0.37	1.31	-	1	1	0	100%	1
4C0Z_SPD_A_1223	95%	63%	0.064	0.966	0.7	0.73	-	-	3	0	100%	1
5JC9_SPD_DA_3190	92%	97%	0.089	0.979	0.12	0.19	-	-	0	0	100%	1
5J7L_SPD_DA_3187	90%	92%	0.094	0.978	0.19	0.33	-	-	0	0	100%	1
7XJM_SPD_B_401	90%	91%	0.078	0.961	0.25	0.33	-	-	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.