GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5V9H designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5V9H_GDP_A_706 | 60% | 44% | 0.138 | 0.922 | 0.93 | 1.23 | - | 5 | 0 | 0 | 100% | 1 |
| 5V9H_GDP_B_705 | 59% | 47% | 0.135 | 0.916 | 0.9 | 1.15 | - | 4 | 0 | 0 | 100% | 1 |
| 3DTB_GDP_A_800 | 98% | 50% | 0.058 | 0.984 | 0.85 | 1.06 | 1 | 2 | 0 | 0 | 100% | 0.8 |
| 2QF2_GDP_A_702 | 90% | 49% | 0.082 | 0.966 | 0.9 | 1.06 | - | 3 | 0 | 0 | 100% | 0.7 |
| 5FH5_GDP_A_703 | 90% | 45% | 0.088 | 0.972 | 0.9 | 1.22 | 1 | 2 | 0 | 0 | 100% | 1 |
| 9EIY_GDP_A_705 | 89% | 46% | 0.064 | 0.941 | 1 | 1.1 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3MOH_GDP_A_1000 | 88% | 25% | 0.09 | 0.967 | 1.2 | 1.84 | 1 | 8 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 8QEG_GDP_A_401 | 100% | 51% | 0.031 | 0.993 | 1.02 | 0.87 | 3 | 1 | 0 | 0 | 100% | 1 |
| 8QEH_GDP_A_405 | 100% | 55% | 0.03 | 0.993 | 0.89 | 0.85 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9BAJ_GDP_A_203 | 100% | 41% | 0.032 | 0.994 | 1.22 | 1.1 | 2 | 2 | 1 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
