GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5VYT designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5VYT_GDP_D_302 | 77% | 42% | 0.1 | 0.938 | 0.92 | 1.3 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5VYT_GDP_C_302 | 72% | 37% | 0.096 | 0.944 | 1.02 | 1.42 | 1 | 3 | 1 | 0 | 86% | 1 |
| 5VYT_GDP_B_302 | 43% | 28% | 0.162 | 0.911 | 1.1 | 1.77 | 2 | 8 | 0 | 0 | 86% | 1 |
| 5VYT_GDP_A_302 | 38% | 33% | 0.157 | 0.882 | 1.13 | 1.53 | 2 | 4 | 0 | 0 | 86% | 1 |
| 5VYS_GDP_B_302 | 70% | 40% | 0.114 | 0.932 | 0.96 | 1.35 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5VYU_GDP_B_302 | 38% | 35% | 0.157 | 0.859 | 1.05 | 1.5 | 1 | 4 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 46% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3K_GDP_A_201 | 100% | 39% | 0.016 | 0.998 | 1.17 | 1.21 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3L_GDP_A_201 | 100% | 49% | 0.021 | 0.997 | 0.91 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9C3N_GDP_A_202 | 100% | 38% | 0.017 | 0.998 | 1.36 | 1.06 | 3 | 1 | 0 | 0 | 100% | 1 |
