1RV9 | pdb_00001rv9

Crystal Structure of Neisseria meningitidis protein NMB0706, Pfam DUF152

PDB DOI: https://doi.org/10.2210/pdb1RV9/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Neisseria meningitidis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-12-13 Released: 2004-08-17
Deposition Author(s): Eswaramoorthy, S., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.53 Å
R-Value Free:
0.209 (Depositor)
R-Value Work:
0.197 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.6 of the entry. See complete history.

Literature

Crystal Structure of a hypothetical protein, NMB0706

Eswaramoorthy, S., Swaminathan, S.

To be published.

Macromolecule Content

Total Structure Weight: 27.25 kDa
Atom Count: 1,937
Modeled Residue Count: 242
Deposited Residue Count: 259
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
conserved hypothetical protein NMB0706	A	259	Neisseria meningitidis	Mutation(s): 0
UniProt
Find proteins for Q9K0A8 (Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)) Explore Q9K0A8 Go to UniProtKB: Q9K0A8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9K0A8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.53 Å
R-Value Free: 0.209 (Depositor)
R-Value Work: 0.197 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.85	α = 90
b = 41.34	β = 99.34
c = 72.14	γ = 90

Software Package:

Software Name	Purpose
MARMAD	data collection
SCALEPACK	data scaling
SOLVE	phasing
CNS	refinement
MARMAD	data reduction
SHARP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2004-08-17

Deposition Author(s):

Eswaramoorthy, S.

Swaminathan, S.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2004-08-17
Type: Initial release
Version 1.1: 2008-04-29
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2011-11-16
Changes: Atomic model
Version 1.4: 2018-01-31
Changes: Experimental preparation
Version 1.5: 2021-02-03
Changes: Derived calculations, Structure summary
Version 1.6: 2024-02-14
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.