Download MendeleyCrystal Structure of E. Coli K-12 Yggs
Sulzenbacher, G., Gruez, A., Spinelli, S., Roig-Zamboni, V., Pagot, F., Bignon, C., Vincentelli, R., Cambillau, C.To be published.
1W8G | pdb_00001w8g
CRYSTAL STRUCTURE OF E. COLI K-12 YGGS
- PDB DOI: https://doi.org/10.2210/pdb1W8G/pdb
- Classification: PLP-BINDING PROTEIN
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2004-09-21 Released: 2006-07-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.195 (Depositor), 0.200 (DCC)
- R-Value Work: 0.161 (Depositor), 0.170 (DCC)
- R-Value Observed: 0.163 (Depositor)
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HYPOTHETICAL UPF0001 PROTEIN YGGS | 234 | Escherichia coli K-12 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P67080 (Escherichia coli (strain K12)) Explore P67080 Go to UniProtKB: P67080 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P67080 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | B [auth A] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| ICT Query on ICT | C [auth A] | ISOCITRIC ACID C6 H8 O7 ODBLHEXUDAPZAU-ZAFYKAAXSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.195 (Depositor), 0.200 (DCC)
- R-Value Work: 0.161 (Depositor), 0.170 (DCC)
- R-Value Observed: 0.163 (Depositor)
Space Group: I 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 124.017 | α = 90 |
| b = 124.017 | β = 90 |
| c = 83.729 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DENZO | data reduction |
| SCALA | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2006-07-05 Deposition Author(s): Sulzenbacher, G., Gruez, A., Spinelli, S., Roig-Zamboni, V., Pagot, F., Bignon, C., Vincentelli, R., Cambillau, C.
Revision History (Full details and data files)
- Version 1.0: 2006-07-05
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
