Download MendeleyCrystal structure of 4-aminobutyrate aminotransferase from Sulfolobus tokodaii strain7
Mizutani, H., Kunishima, N.To be published.
2EO5 | pdb_00002eo5
Crystal structure of 4-aminobutyrate aminotransferase from Sulfolobus tokodaii strain7
- PDB DOI: https://doi.org/10.2210/pdb2EO5/pdb
- Classification: TRANSFERASE
- Organism(s): Sulfurisphaera tokodaii str. 7
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-03-29 Released: 2007-10-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.209 (Depositor), 0.200 (DCC)
- R-Value Work: 0.181 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.181 (Depositor)
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 419aa long hypothetical aminotransferase | 419 | Sulfurisphaera tokodaii str. 7 | Mutation(s): 0 EC: 2.6.1.19 |  | |
UniProt | |||||
Find proteins for F9VN77 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore F9VN77 Go to UniProtKB: F9VN77 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F9VN77 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | C [auth A] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.209 (Depositor), 0.200 (DCC)
- R-Value Work: 0.181 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.181 (Depositor)
Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 88.046 | α = 90 |
| b = 91.17 | β = 90 |
| c = 132.463 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2007-10-02 Deposition Author(s): Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-10-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.2: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
