Download MendeleyCrystal structure of fms1 in complex with N1-AcSpermine
Huang, Q., Hao, Q.To be published.
3CND | pdb_00003cnd
Crystal structure of fms1 in complex with N1-AcSpermine
- PDB DOI: https://doi.org/10.2210/pdb3CND/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Saccharomyces cerevisiae
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2008-03-25 Released: 2008-04-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.277 (Depositor)
- R-Value Work: 0.227 (Depositor), 0.230 (DCC)
- R-Value Observed: 0.227 (Depositor)
Starting Model: experimental
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This is version 1.4 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polyamine oxidase FMS1 | A [auth B], B [auth A] | 516 | Saccharomyces cerevisiae | Mutation(s): 0 Gene Names: FMS1 EC: 1.5.3.11 (PDB Primary Data), 1.5.3.17 (UniProt) |  |
UniProt | |||||
Find proteins for P50264 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P50264 Go to UniProtKB: P50264 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P50264 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FAD Query on FAD | C [auth B], E [auth A] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N |  | ||
| SP5 Query on SP5 | D [auth B] | N-[3-({4-[(3-aminopropyl)amino]butyl}amino)propyl]acetamide C12 H28 N4 O GUNURVWAJRRUAV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.277 (Depositor)
- R-Value Work: 0.227 (Depositor), 0.230 (DCC)
- R-Value Observed: 0.227 (Depositor)
Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 102.579 | α = 90 |
| b = 215.853 | β = 90 |
| c = 118.904 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | phasing |
| REFMAC | refinement |
Entry History
Revision History (Full details and data files)
- Version 1.0: 2008-04-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2019-07-24
Changes: Data collection, Refinement description - Version 1.3: 2023-08-30
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.4: 2024-10-30
Changes: Structure summary
