4P3S | pdb_00004p3s

Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 
    0.265 (Depositor), 0.230 (DCC) 
  • R-Value Work: 
    0.219 (Depositor), 0.190 (DCC) 

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Literature

Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticin

Kondo, J., Koganei, M.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains LengthOrganismImage
5'-R(*UP*UP*GP*CP*GP*UP*CP*CP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'
A, B
23synthetic construct
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free:  0.265 (Depositor), 0.230 (DCC) 
  • R-Value Work:  0.219 (Depositor), 0.190 (DCC) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 34.09α = 90
b = 88.83β = 90
c = 46.61γ = 90
Software Package:
Software NamePurpose
CrystalCleardata collection
PHENIXphasing
CNSrefinement
PDB_EXTRACTdata extraction
SOLVEphasing
d*TREKdata scaling

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
MEXTJapan23790054

Revision History  (Full details and data files)

  • Version 1.0: 2016-05-04
    Type: Initial release
  • Version 1.1: 2023-12-27
    Changes: Data collection, Database references, Derived calculations