Download MendeleyStructure of ConA/Rh3Man
Chen, G., Sakai, F., Weiss, M.S.To be published.
4P9W | pdb_00004p9w
Structure of ConA/Rh3Man
- PDB DOI: https://doi.org/10.2210/pdb4P9W/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Canavalia ensiformis
- Mutation(s): No
- Deposited: 2014-04-06 Released: 2014-08-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.11 Å
- R-Value Free: 0.202 (Depositor), 0.210 (DCC)
- R-Value Work: 0.173 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.174 (Depositor)
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Concanavalin-A | 237 | Canavalia ensiformis | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P02866 (Canavalia ensiformis) Explore P02866 Go to UniProtKB: P02866 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P02866 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| R3M Query on R3M | E [auth A], H [auth B], K [auth C], N [auth D] | 2-[2-(2-{4-[(alpha-D-mannopyranosyloxy)methyl]-1H-1,2,3-triazol-1-yl}ethoxy)ethoxy]ethyl 2-[3,6-bis(diethylamino)-9H-xanthen-9-yl]benzoate C43 H57 N5 O11 LPSYXQPVOZLKRL-VWIMFXPFSA-N |  | ||
| MN Query on MN | F [auth A], I [auth B], L [auth C], O [auth D] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
| CA Query on CA | G [auth A], J [auth B], M [auth C], P [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.11 Å
- R-Value Free: 0.202 (Depositor), 0.210 (DCC)
- R-Value Work: 0.173 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.174 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84 | α = 90 |
| b = 116.03 | β = 95.03 |
| c = 84.1 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOLREP | phasing |
| PDB_EXTRACT | data extraction |
| REFMAC | refinement |
| Coot | model building |
| XDS | data scaling |
Entry History
Deposition Data
- Released Date: 2014-08-27 Deposition Author(s): Sakai, F., Weiss, M.S., Jiang, M.
Revision History (Full details and data files)
- Version 1.0: 2014-08-27
Type: Initial release - Version 1.1: 2017-11-22
Changes: Database references, Derived calculations, Other, Refinement description, Source and taxonomy - Version 1.2: 2023-12-27
Changes: Data collection, Database references, Derived calculations, Refinement description
