Download MendeleyCrystal structure of a glutamate-binding subunit from a TAXI-TRAP transporter
Antony, I.R., Currie, M.J., Newton-Vesty, M.C., Tillett, Z.D., Allison, T.M., Dobson, R.C.J.To be published.
8U79 | pdb_00008u79
Crystal Structure of Substrate Binding Protein of Thermus thermophilus TAXI-TRAP protein with L-glutamate
- PDB DOI: https://doi.org/10.2210/pdb8U79/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2023-09-14 Released: 2025-03-19
- Funding Organization(s): Other government
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.11 Å
- R-Value Free: 0.138 (Depositor), 0.137 (DCC)
- R-Value Work: 0.120 (Depositor), 0.119 (DCC)
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Immunogenic protein | 318 | Thermus thermophilus HB8 | Mutation(s): 0 Gene Names: TTHA1157 |  | |
UniProt | |||||
Find proteins for Q5SJ57 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SJ57 Go to UniProtKB: Q5SJ57 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SJ57 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CIT Query on CIT | D [auth A] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| GLU (Subject of Investigation/LOI) Query on GLU | B [auth A] | GLUTAMIC ACID C5 H9 N O4 WHUUTDBJXJRKMK-VKHMYHEASA-N |  | ||
| EDO Query on EDO | C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.11 Å
- R-Value Free: 0.138 (Depositor), 0.137 (DCC)
- R-Value Work: 0.120 (Depositor), 0.119 (DCC)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.547 | α = 90 |
| b = 67.913 | β = 90 |
| c = 81.17 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOLREP | phasing |
| Coot | model building |
| XDS | data reduction |
| Aimless | data scaling |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-03-19 Deposition Author(s): Antony, I.R., Currie, M., Dobson, R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Other government | New Zealand | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-03-19
Type: Initial release
