9KQ9 | pdb_00009kq9

Deposited: 2024-11-25 Released: 2025-10-01
Deposition Author(s): Zhang, L.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

(2025) Nat Commun

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Asparagine synthetase domain-containing protein	A B [auth C] C [auth E] D [auth F] E [auth H] A, B [auth C], C [auth E], D [auth F], E [auth H], F [auth L], G [auth N], H [auth B], I [auth D], J [auth G], K [auth I], L [auth J], M [auth K], N [auth M]	234	Erwinia amylovora ATCC 49946	Mutation(s): 0 Gene Names: BN437_1047
UniProt
Find proteins for A0A831ERP2 (Erwinia amylovora NBRC 12687 = CFBP 1232) Explore A0A831ERP2 Go to UniProtKB: A0A831ERP2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A831ERP2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GTP (Subject of Investigation/LOI) Query on GTP Download Ideal Coordinates CCD File SDF format, chain O [auth E] SDF format, chain P [auth H] SDF format, chain Q [auth L] SDF format, chain R [auth N] SDF format, chain S [auth G] SDF format, chain T [auth J] SDF format, chain U [auth M] MOL2 format, chain O [auth E] MOL2 format, chain P [auth H] MOL2 format, chain Q [auth L] MOL2 format, chain R [auth N] MOL2 format, chain S [auth G] MOL2 format, chain T [auth J] MOL2 format, chain U [auth M] mmCIF format, chain O [auth E] mmCIF format, chain P [auth H] mmCIF format, chain Q [auth L] mmCIF format, chain R [auth N] mmCIF format, chain S [auth G] mmCIF format, chain T [auth J] mmCIF format, chain U [auth M]	O [auth E] P [auth H] Q [auth L] R [auth N] S [auth G] O [auth E], P [auth H], Q [auth L], R [auth N], S [auth G], T [auth J], U [auth M]	GUANOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₄ P₃ XKMLYUALXHKNFT-UUOKFMHZSA-N		Interactions Focus chain O [auth E] Focus chain P [auth H] Focus chain Q [auth L] Focus chain R [auth N] Focus chain S [auth G] Focus chain T [auth J] Focus chain U [auth M] Interactions & Density Focus chain O [auth E] Focus chain P [auth H] Focus chain Q [auth L] Focus chain R [auth N] Focus chain S [auth G] Focus chain T [auth J] Focus chain U [auth M]