Download MendeleyB12 Binding protein - BtuK1
Clarke, C., Banasik, M., Pickersgill, R.W.To be published.
9S6C | pdb_00009s6c
B12 Binding protein - BtuK1
- PDB DOI: https://doi.org/10.2210/pdb9S6C/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Bacteroides thetaiotaomicron
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2025-07-31 Released: 2025-09-17
- Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.82 Å
- R-Value Free: 0.192 (Depositor), 0.195 (DCC)
- R-Value Work: 0.163 (Depositor), 0.164 (DCC)
Starting Model: in silico
View more details
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Quinoprotein amine dehydrogenase-like protein | A [auth C] | 337 | Bacteroides thetaiotaomicron | Mutation(s): 0 Gene Names: BT_1486 |  |
UniProt | |||||
Find proteins for Q8A7N8 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)) Explore Q8A7N8 Go to UniProtKB: Q8A7N8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8A7N8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Quinoprotein amine dehydrogenase-like protein | B [auth A], C [auth B] | 339 | Bacteroides thetaiotaomicron | Mutation(s): 0 Gene Names: BT_1486 |  |
UniProt | |||||
Find proteins for Q8A7N8 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)) Explore Q8A7N8 Go to UniProtKB: Q8A7N8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8A7N8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CNC (Subject of Investigation/LOI) Query on CNC | D [auth C], E [auth A], F [auth B] | CYANOCOBALAMIN C63 H89 Co N14 O14 P SYZBZQWSWIJYAR-UVKKECPRSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.82 Å
- R-Value Free: 0.192 (Depositor), 0.195 (DCC)
- R-Value Work: 0.163 (Depositor), 0.164 (DCC)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.739 | α = 90 |
| b = 129.984 | β = 90 |
| c = 164.66 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| gemmi | data extraction |
| REFMAC | refinement |
| autoPROC | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-09-17 Deposition Author(s): Clarke, C., Banasik, M., Pickersgill, R.W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-09-17
Type: Initial release
