Download MendeleyLipase calB candida antarctica with lysine ligand
Jelsch, C., Favier, F., Didierjean, C.To be published.
9FDE | pdb_00009fde
Lipase calB candida antarctica with lysine ligand
- PDB DOI: https://doi.org/10.2210/pdb9FDE/pdb
- Classification: HYDROLASE
- Organism(s): Moesziomyces antarcticus
- Expression System: Escherichia coli B, Escherichia coli
- Mutation(s): No
- Deposited: 2024-05-16 Released: 2025-05-28
- Funding Organization(s): Centre National de la Recherche Scientifique (CNRS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.257 (Depositor), 0.240 (DCC)
- R-Value Work: 0.205 (Depositor), 0.189 (DCC)
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lipase B | 317 | Moesziomyces antarcticus | Mutation(s): 0 EC: 3.1.1.3 |  | |
UniProt | |||||
Find proteins for P41365 (Pseudozyma antarctica) Explore P41365 Go to UniProtKB: P41365 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P41365 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lipase B | 315 | Moesziomyces antarcticus | Mutation(s): 0 EC: 3.1.1.3 |  | |
UniProt | |||||
Find proteins for P41365 (Pseudozyma antarctica) Explore P41365 Go to UniProtKB: P41365 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P41365 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| LYS (Subject of Investigation/LOI) Query on LYS | D [auth B] | LYSINE C6 H15 N2 O2 KDXKERNSBIXSRK-YFKPBYRVSA-O |  | ||
| CL Query on CL | C [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.257 (Depositor), 0.240 (DCC)
- R-Value Work: 0.205 (Depositor), 0.189 (DCC)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 45.318 | α = 90 |
| b = 107.476 | β = 90.043 |
| c = 68.235 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-05-28 Deposition Author(s): Jelsch, C., Favier, F., Didierjean, C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Centre National de la Recherche Scientifique (CNRS) | France | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-05-28
Type: Initial release
